Further information on above:
I found that after re-entering the Command Object SQL several times, the exact SQL query I entered did in fact appear in the 'Show SQL Query' result at the bottom of the window and TOTALLY DETACHED from the rest of the SQL above it.
When I do a report Preview, after a long time, I get an error message: Not Supported.
I recollect that After creating the Command Object in Database Expert, I received a message: "More than one datasource or Stored Proc has been used in this report...", but I ignored it, since the link was present doing a LEFT JOIN of the pre-existing table to the Command Obj, and appeared correct. This may well be my problem -- the link appears to be IGNORED. I'm hoping someone has experience with Command Objects and will have some insight into what to do.